1.
>dm3_flyBaseGene_CG42312-RB_0 range=chr3R:1042655-1043147 5'pad=0 ...
>dm3_flyBaseGene_CG42312-RB_0 range=chr3R:1042655-1043147 5'pad=0 3'pad=0 strand=- repeatMasking=none TCGAAGGCGCGCGTTGCTCGCGTTTCTTGAGTTCTTGATTCTCATGAAAT ...
2.
AMP-binding.15.eDec03 chr10 274129 279635 - 4.82 AMP-binding.15 ...
bDec03 chr10 1019322 1019872 - 2.28 IDI1.eDec03 chr10 1039360 1048841 - 3.37 IDI1.bDec03 chr10 1039360 1048879 - 3.37 IDI1.nDec03 chr10 1039845 1048979 ...
3.
Publications
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, and Miller W. ...
4.
RepeatMasker Database
(TGGGGG)n. Class: Simple_repeat, The interspersed repeat class ( ie. LINE, SINE, LTR, DNA Transposon etc. ). Family: The interspersed repeat subfamily. ...
5.
Input format:
Sequences can be pasted in or uploaded as files, both in fasta format. Multiple fasta format sequences may be pasted in at once or may be contained within a ...
6.
315 0.00 0.00 0.00 UnnamedSequence 1939 1973 (5382) + (CA)n ...
C ANGEL#DNA/hAT 313 GGGATAGTTCACCCAAAAATGAAAATTCTGTCATTATTTACTCACCCTTN 264 UnnamedSequen 6560 TGTGGTTTTAAACCTTTATGAGTTTCTCTCTTCGGT 6595 vv v ii i v C ...
7.
14815 0.78 0.24 0.71 BACR07N15 1 1693 (71447) + FW_DM LINE/Jockey ...
14815 0.78 0.24 0.71 BACR07N15 1 1693 (71447) + FW_DM LINE/Jockey 3008 4692 ...... BACR07N15 61683 TTCATCCGGCCTCGCAAAGAGCTAAAGGGTGTCTGCCCGGTGGACTCCCC 61732 ...
8.
SW perc perc perc query position in query matching repeat position ...
... Low_complexity 2 48 (0) 87 207 0.0 0.0 0.0 chr1_9 116885 116907 (883093) + ... Low_complexity 1 24 (0) 92 24 41.7 0.0 0.0 chr1_9 123166 123189 (876811) ...
9.
SW perc perc perc query position in query matching repeat position ...
... 728 14.4 0.0 2.3 0043 235 362 (619) C L1PA8 LINE/L1 (0) 6172 6048 13 213 ..... 0532 1 106 (35) C AluJr SINE/Alu (205) 107 2 229 1123 11.3 0.0 0.0 0544 1 ...
10.
SW perc perc perc query position in query matching repeat position ...
... DNA/hAT-Charlie (15) 326 98 9 578 21.9 0.8 0.8 UnnamedSequence 8829 8952 .... 1.2 UnnamedSequence 50374 50455 (138247) C MARNA DNA/TcMar-Mariner (98) ...